Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2717306 chr3:182476075 G/C 1.22E-5 173 13.27 27.2 25.53 KM Plot
PCPG rs2717311 chr3:182475373 C/T 1.22E-5 173 13.27 27.2 25.53 KM Plot
PCPG rs2730231 chr7:158784939 C/T 5.05E-5 176 3.17 22.63 26.27 KM Plot
PCPG rs2730234 chr7:158782584 A/G 3.54E-5 172 3.17 24.7 25.77 KM Plot
PCPG rs274134 chr1:36580554 T/C 4.26E-11 176 10.3 25.67 25.08 KM Plot
PCPG rs274137 chr1:36577945 A/G 4.84E-11 178 10.3 27.27 24.77 KM Plot
PCPG rs274138 chr1:36577664 A/G 4.26E-11 176 10.3 25.67 25.08 KM Plot
PCPG rs2762143 chr13:37506425 T/A 0.00034 178 6.37 24.7 25.7 KM Plot
PCPG rs2769541 chr13:37501421 T/C 0.000372 177 6.37 24.7 25.53 KM Plot
PCPG rs2769543 chr13:37504492 A/G 0.000338 177 6.37 24.47 25.92 KM Plot
PCPG rs2770002 chr13:114165490 A/G 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2770030 chr13:114155524 C/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2770035 chr13:114171685 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2770037 chr13:114170062 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2770038 chr13:114170056 A/G 4.67E-12 177 24.17 29.57 3.32 KM Plot